Method for measurement of collagen monomer orientation in fluorescence microscopy

Rodrigo P. Alzola*, Seyed Mohammad Siadat, Anuj Gajjar, Rickard Stureborg, Jeffrey W. Ruberti, Jose Delpiano, Charles A. Dimarzio

*Autor correspondiente de este trabajo

Producción científica: Contribución a una revistaArtículorevisión exhaustiva

1 Cita (Scopus)


Significance: Collagen is the most abundant protein in vertebrates and is found in tissues that regularly experience tension, compression, and shear forces. However, the underlying mechanism of collagen fibril formation and remodeling is poorly understood. Aim: We explore how a collagen monomer is visualized using fluorescence microscopy and how its spatial orientation is determined. Defining the orientation of collagen monomers is not a trivial problem, as the monomer has a weak contrast and is relatively small. It is possible to attach fluorescence tags for contrast, but the size is still a problem for detecting orientation using fluorescence microscopy. Approach: We present two methods for detecting a monomer and classifying its orientation. A modified Gabor filter set and an automatic classifier trained by convolutional neural network based on a synthetic dataset were used. Results: By evaluating the performance of these two approaches with synthetic and experimental data, our results show that it is possible to determine the location and orientation with an error of 1/437 deg of a single monomer with fluorescence microscopy. Conclusions: These findings can contribute to our understanding of collagen monomers interaction with collagen fibrils surface during fibril formation and remodeling.

Idioma originalInglés
Número de artículo076501
PublicaciónJournal of Biomedical Optics
EstadoPublicada - 31 jul. 2021

Nota bibliográfica

Funding Information:
JR, CD, and SMS gratefully acknowledge partial funding from the United States National Institutes of Health under Grant No. 1R21EY029167-01. JD thankfully acknowledges funding from Project FONDECYT 1180685 (Comision Nacional de Investigacion Cientifica y Tecnologica Chile), the Advanced Center of Electrical and Electronic Engineering AC3E (CONICYT/FB0008), and from Fondo de Ayuda a la Investigacion (FAI), Universidad de los Andes.

Publisher Copyright:
© The Authors. Published by SPIE under a Creative Commons Attribution 4.0 Unported License. Distribution or reproduction of this work in whole or in part requires full attribution of the original publication, including its DOI.


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